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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3142619_3143730_F

Intron Information:

Intron Rank:
135385
Intron Class:
major
Intron Phase:
Intron Coordinates:
3142619 - 3143730
Intron Length:
1112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAGGAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
51.9
0.05
1.4
51.7
43.9
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022851
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031978
3141853 - 3144801
2949