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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3210028_3210234_R

Intron Information:

Intron Rank:
134770
Intron Class:
major
Intron Phase:
Intron Coordinates:
3210028 - 3210234
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTATCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCCTTCTCATTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.6
0.67
0.8
72.9
31.8
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
46.8
-0.3
1.8
50.31
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019830
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022661
3199567 - 3210325
10759