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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3226614_3226872_F

Intron Information:

Intron Rank:
135472
Intron Class:
major
Intron Phase:
Intron Coordinates:
3226614 - 3226872
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTCTTTCCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
74.1
36.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
72.5
0.51
1
74.1
28.4
Minor 5ss
34.8
-1.7
3
41.6
39.5
Minor BPS
69.3
0.68
1.8
90.28
33.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022886
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024436
3224121 - 3228859
4739