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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3279708_3280877_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3279708 - 3280877
Intron Length:
1170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTTAACTCCATC
Flanking Amino Acid:
LWKNRSDIGLVGNHIDVVTA
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
70.2
35.9
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
78.2
0.63
0.9
69.5
41.6
Minor 5ss
26.7
-2.7
3
27.9
37.8
Minor BPS
46.3
-0.3
2.1
64.51
41.1

Associated Gene:

Gene:
EDEM2
Ensembl Gene ID:
ENSAPLG00000009712
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010135
3278491 - 3285793
7303