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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3281020_3281241_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3281020 - 3281241
Intron Length:
222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TCCCCTCTAATA
Flanking Amino Acid:
QDKELMSMFLEYNKAIKNYT
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.1
38.4
Major BPS
71.3
0.53
1
61.3
37
Major PPT
69.3
0.43
0.8
65.4
29
Minor 5ss
33.3
-1.9
2.8
40
45.7
Minor BPS
51.7
0.05
1.7
60.86
39.9

Associated Gene:

Gene:
EDEM2
Ensembl Gene ID:
ENSAPLG00000009712
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010135
3278491 - 3285793
7303