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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3282214_3283375_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3282214 - 3283375
Intron Length:
1162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
ATGCTTGCAACT
Flanking Amino Acid:
DKREGYPLRPELIESAMYLY
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
44.5
-0.3
2.1
63.25
41.4

Associated Gene:

Gene:
EDEM2
Ensembl Gene ID:
ENSAPLG00000009712
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010135
3278491 - 3285793
7303