Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3328366_3328500_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3328366 - 3328500

Intron Length:

135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGTGCG

5'SS Class:

strong_major

3'SS Sequence:

GTCCCTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

GTCCCTCCCACA

Flanking Amino Acid:

AEKDEEFENLRRNHQRAMDS

Intron Amino Acid Position:

1595

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

67.5

37.7

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

71.4

0.48

0.8

64.6

Minor 5ss

33.6

-1.9

40.8

45.6

Minor BPS

40.2

-0.7

2.1

50.43

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028951

3326210 - 3350077

23868

ENSAPLT00000012084

3326210 - 3352663

26454