Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3341564_3342093_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3341564 - 3342093

Intron Length:

530

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTGCCTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TGCTCATGACCT

Flanking Amino Acid:

YVTKGQNVEQVVYAVGALAK

Intron Amino Acid Position:

424

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

72.2

39.5

Major BPS

79.7

0.74

79.6

35.6

Major PPT

73.7

0.53

69.9

36.5

Minor 5ss

29.5

-2.4

3.4

39.1

46.7

Minor BPS

48.9

-0

70.98

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028951

3326210 - 3350077

23868

ENSAPLT00000012084

3326210 - 3352663

26454