Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3343868_3344691_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3343868 - 3344691

Intron Length:

824

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCCATACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAG

U12 Branch Point Sequence:

CTGGCCTCACCC

Flanking Amino Acid:

ILSGKKPELQDMLLLSLNPY

Intron Amino Acid Position:

303

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

69.6

42.7

Major BPS

62.2

0.3

1.5

71.4

36.6

Major PPT

75.1

0.57

0.8

30.6

Minor 5ss

30.1

-2.3

3.2

37.6

47.1

Minor BPS

47.6

-0.2

57.89

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028951

3326210 - 3350077

23868

ENSAPLT00000012084

3326210 - 3352663

26454