Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3344972_3345744_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3344972 - 3345744

Intron Length:

773

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTAAGTGTC

5'SS Class:

major

3'SS Sequence:

AAACGTTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAA

U12 Branch Point Sequence:

CAGTGCTTACCT

Flanking Amino Acid:

TIRNDNSSRFGKFIRIHFGP

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

74.4

34.2

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

70.8

0.47

66.1

44.2

Minor 5ss

39.8

-1.1

3.4

58.5

40.5

Minor BPS

50.6

0.1

2.1

68.48

48.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011220

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028951

3326210 - 3350077

23868

ENSAPLT00000012084

3326210 - 3352663

26454