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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3347200_3348063_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3347200 - 3348063
Intron Length:
864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGACCC
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCCAGATTC
Flanking Amino Acid:
ALGDTPGKKLATLATKTGGT
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
58.9
38.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87
0.83
0.6
81.2
30.9
Minor 5ss
35.1
-1.7
3.1
46
36.7
Minor BPS
51.8
0.04
2
72.45
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011220
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028951
3326210 - 3350077
23868
ENSAPLT00000012084
3326210 - 3352663
26454