Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3364518_3364619_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3364518 - 3364619

Intron Length:

102

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGAGC

5'SS Class:

strong_major

3'SS Sequence:

GTGTCTCCTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTAAC

U12 Branch Point Sequence:

CGGGGTGTAACG

Flanking Amino Acid:

AKAWELYGSRSAVVMFLVEE

Intron Amino Acid Position:

203

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.9

38.2

Major BPS

56.8

0.17

1.4

61.4

43.2

Major PPT

72.5

0.51

0.9

66.8

35.5

Minor 5ss

27.2

-2.6

33.9

41.8

Minor BPS

38.4

-1

2.3

38.58

45.2

Associated Gene:

Gene:

GSS

Ensembl Gene ID:

ENSAPLG00000015589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028576

3362995 - 3369155

6161

ENSAPLT00000016256

3362995 - 3369839

6845