Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3364701_3365311_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3364701 - 3365311

Intron Length:

611

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGCAG

5'SS Class:

major

3'SS Sequence:

GCTCCTCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGACCAT

U12 Branch Point Sequence:

TGCTGTGTGACC

Flanking Amino Acid:

QRCVENELWNRNIRVIRKRF

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

62.9

43.2

Major BPS

50.4

0.01

1.4

60.8

45.4

Major PPT

76.1

0.59

0.8

73.3

31.6

Minor 5ss

29.5

-2.4

3.3

37.6

47.1

Minor BPS

44.3

-0.4

2.3

57.55

42.1

Associated Gene:

Gene:

GSS

Ensembl Gene ID:

ENSAPLG00000015589

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028576

3362995 - 3369155

6161

ENSAPLT00000016256

3362995 - 3369839

6845