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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3365390_3366460_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3365390 - 3366460
Intron Length:
1071

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
CTTTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
CTGGCTCTGATG
Flanking Amino Acid:
GSLDEARRLYMDGQEVAVVY
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.5
37
Major BPS
79
0.72
1
69
38.9
Major PPT
84.4
0.77
0.8
76.5
37.6
Minor 5ss
33
-1.9
2.7
39.5
38.8
Minor BPS
44.4
-0.5
1.8
45.92
41.9

Associated Gene:

Gene:
GSS
Ensembl Gene ID:
ENSAPLG00000015589
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028576
3362995 - 3369155
6161
ENSAPLT00000016256
3362995 - 3369839
6845