Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3373204_3373930_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3373204 - 3373930

Intron Length:

727

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGGACA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTGCAG

U12 Branch Point Sequence:

CCCCACGCAGCT

Flanking Amino Acid:

GRIDDMLNVSGHLLSTAEVE

Intron Amino Acid Position:

598

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

74.1

Major BPS

44.4

-0.3

1.8

57.1

49.4

Major PPT

85.6

0.8

77.2

37.1

Minor 5ss

32.7

-2

3.1

37.9

40.9

Minor BPS

34.8

-1

2.2

46.18

45.2

Associated Gene:

Gene:

ACSS2

Ensembl Gene ID:

ENSAPLG00000015932

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023811

3370129 - 3401122

30994

ENSAPLT00000016650

3371455 - 3401122

29668

ENSAPLT00000043150

3370129 - 3401122

30994