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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3374000_3374142_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3374000 - 3374142
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGTGG
5'SS Class:
major
3'SS Sequence:
TGGTTATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TTCTGGTTATTT
Flanking Amino Acid:
KFPGYYVTGDGCRRDKDGYY
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
45.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
76.6
0.6
0.9
74.4
40.4
Minor 5ss
36.6
-1.5
3.3
47.3
48.1
Minor BPS
45.7
-0.2
2.5
70.91
46.7

Associated Gene:

Gene:
ACSS2
Ensembl Gene ID:
ENSAPLG00000015932
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023811
3370129 - 3401122
30994
ENSAPLT00000016650
3371455 - 3401122
29668
ENSAPLT00000043150
3370129 - 3401122
30994