Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3375189_3375575_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3375189 - 3375575

Intron Length:

387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

CCTCCCTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTCAC

U12 Branch Point Sequence:

ATCACCTAAACT

Flanking Amino Acid:

IVDTFWQTETGGHMLTSLPA

Intron Amino Acid Position:

493

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

66.2

39.6

Major BPS

68.4

0.46

0.9

69.3

26.9

Major PPT

77.3

0.61

0.7

71.1

26.9

Minor 5ss

30.5

-2.2

2.8

37.9

39.5

Minor BPS

64.6

0.54

1.7

79.06

42.9

Associated Gene:

Gene:

ACSS2

Ensembl Gene ID:

ENSAPLG00000015932

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043150

3370129 - 3401122

30994

ENSAPLT00000023811

3370129 - 3401122

30994

ENSAPLT00000016650

3371455 - 3401122

29668