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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3375709_3376190_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3375709 - 3376190
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
CTCTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
GCCTGCTGAGCC
Flanking Amino Acid:
LMKHGEEPVKKHSRKSLKVL
Intron Amino Acid Position:
448

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.7
39.3
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
85.5
0.8
0.7
80.5
24.8
Minor 5ss
29.8
-2.3
2.8
32.5
35.8
Minor BPS
44.3
-0.4
2.1
51.68
45.2

Associated Gene:

Gene:
ACSS2
Ensembl Gene ID:
ENSAPLG00000015932
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023811
3370129 - 3401122
30994
ENSAPLT00000016650
3371455 - 3401122
29668
ENSAPLT00000043150
3370129 - 3401122
30994