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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3385226_3385930_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3385226 - 3385930
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAC
U12 Branch Point Sequence:
TTTCCCTCCACA
Flanking Amino Acid:
CQFANVLRDQGVKKGDRISI
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
64.1
41.8
Major BPS
74.7
0.62
1.1
65.7
41
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
35.3
-1.7
3.6
49.7
46.9
Minor BPS
59.9
0.31
2
77.44
39.2

Associated Gene:

Gene:
ACSS2
Ensembl Gene ID:
ENSAPLG00000015932
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043150
3370129 - 3401122
30994
ENSAPLT00000023811
3370129 - 3401122
30994
ENSAPLT00000016650
3371455 - 3401122
29668