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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3400888_3400998_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3400888 - 3400998
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGGA
5'SS Class:
major
3'SS Sequence:
TCCGGCGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAACA
Flanking Amino Acid:
LYQRSVEEPQEFWGDIAKEF
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.1
40.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
68.6
0.42
1
60.7
40.3
Minor 5ss
22.7
-3.1
3.2
19.9
37.9
Minor BPS
79.5
0.92
1
82.37
32.8

Associated Gene:

Gene:
ACSS2
Ensembl Gene ID:
ENSAPLG00000015932
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043150
3370129 - 3401122
30994
ENSAPLT00000016650
3371455 - 3401122
29668