Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3413968_3414202_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3413968 - 3414202

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCCCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGGCAA

U12 Branch Point Sequence:

CAATCGGTGAGC

Flanking Amino Acid:

EEEAKGTNLKRTKSVSSMSE

Intron Amino Acid Position:

773

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

44.3

-0.3

1.5

49.1

46.3

Major PPT

81.9

0.72

0.7

77.1

24.8

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

37.6

-0.9

2.6

46.57

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031378

3412281 - 3419848

7568