Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3414274_3414661_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3414274 - 3414661

Intron Length:

388

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGGGCAGG

5'SS Class:

major

3'SS Sequence:

TGTGTCCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAC

U12 Branch Point Sequence:

CCTTCTGCCACC

Flanking Amino Acid:

MEKHGGNWKEALNEKITDKE

Intron Amino Acid Position:

750

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.1

59.7

46.7

Major BPS

-0.2

1.4

53.5

Major PPT

0.47

0.9

62.6

39.7

Minor 5ss

31.9

-2.1

3.1

39.2

46.3

Minor BPS

41.2

-0.7

2.4

53.34

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023177

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031378

3412281 - 3419848

7568