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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3414734_3414887_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3414734 - 3414887
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGTGT
5'SS Class:
major
3'SS Sequence:
GCGTGTTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATACAC
U12 Branch Point Sequence:
CGTTGGGTGACC
Flanking Amino Acid:
AKDLQNKLNQLQKGANPWAL
Intron Amino Acid Position:
726

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
68.2
39.1
Major BPS
52.7
0.07
1
62.3
33.2
Major PPT
71.5
0.49
1
61.6
44.5
Minor 5ss
39.1
-1.2
3.3
55.4
48.8
Minor BPS
38.8
-0.9
2.8
53.74
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023177
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031378
3412281 - 3419848
7568