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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3438936_3448456_F

Intron Information:

Intron Rank:
126612
Intron Class:
major
Intron Phase:
Intron Coordinates:
3438936 - 3448456
Intron Length:
9521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
GCTTTGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
ATGCTCTGAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
75.5
0.57
1
68.6
42.1
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
48.8
-0.1
1.7
58.72
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018237
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028208
3438911 - 3449174
10264