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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3438936_3465962_F

Intron Information:

Intron Rank:
126614
Intron Class:
major
Intron Phase:
Intron Coordinates:
3438936 - 3465962
Intron Length:
27027

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TCCTCTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TCTGTTTAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.3
69.3
43.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
80.2
0.68
0.8
72
37.9
Minor 5ss
37
-1.5
2.7
47
41.7
Minor BPS
54.2
0.13
1.8
65.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018237
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034225
3438911 - 3466034
27124