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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3466022_3467388_F

Intron Information:

Intron Rank:
126616
Intron Class:
major
Intron Phase:
Intron Coordinates:
3466022 - 3467388
Intron Length:
1367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TCCTTCTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCACGCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
77.3
37.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
87.5
0.84
0.7
80
32
Minor 5ss
39.3
-1.2
2.8
53.1
38.8
Minor BPS
49.4
0.04
1.9
67.17
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018237
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035540
3448325 - 3467731
19407