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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_347038_348903_R

Intron Information:

Intron Rank:
9
Intron Class:
minor
Intron Phase:
0
Intron Coordinates:
347038 - 348903
Intron Length:
1866

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
TTA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTTTTGTGTGTAC|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTCCATAACC
Flanking Amino Acid:
GTLTGLISALVLKHIDLRKT
Intron Amino Acid Position:
375

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
31.6
-1.1
3.3
48.7
42.6
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
44.1
-0.3
3.2
69.5
41.6
Minor 5ss
98.7
1.62
0.6
95.7
10.4
Minor BPS
82
0.99
1.5
91.99
26.7

Associated Gene:

Gene:
SLC9A8
Ensembl Gene ID:
ENSAPLG00000014727
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039498
339022 - 365130
26109
ENSAPLT00000015414
337216 - 365130
27915