Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3472442_3472563_F

Intron Information:

Intron Rank:

126611

Intron Class:

major

Intron Phase:

Intron Coordinates:

3472442 - 3472563

Intron Length:

122

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAGGTACT

5'SS Class:

major

3'SS Sequence:

CTTTTAATCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCACTTTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

1.1

75.3

40.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

79.4

0.66

0.8

73.5

34.7

Minor 5ss

36.5

-1.5

43.6

Minor BPS

55.1

0.14

1.3

55.34

37.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021831

3467389 - 3473034

5646