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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3492852_3493454_F

Intron Information:

Intron Rank:
127119
Intron Class:
major
Intron Phase:
Intron Coordinates:
3492852 - 3493454
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGCCCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.2
35.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
32.6
-2
3.7
46.4
48.9
Minor BPS
53.3
0.19
1.7
69.55
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018532
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018509
3492706 - 3495172
2467