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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3493588_3494863_F

Intron Information:

Intron Rank:
127120
Intron Class:
major
Intron Phase:
Intron Coordinates:
3493588 - 3494863
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACCAC
U12 Branch Point Sequence:
TGCCCCTTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.8
38.2
Major BPS
55.7
0.14
1.3
66.8
39.4
Major PPT
85.6
0.8
0.7
77.5
31.2
Minor 5ss
37.9
-1.4
2.9
50.8
38.5
Minor BPS
62.3
0.38
1.7
69.6
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018532
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018509
3492706 - 3495172
2467