Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3494016_3494863_F

Intron Information:

Intron Rank:

127121

Intron Class:

major

Intron Phase:

Intron Coordinates:

3494016 - 3494863

Intron Length:

848

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGCAGG

5'SS Class:

major

3'SS Sequence:

TTTCCCTCTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTACCAC

U12 Branch Point Sequence:

TGCCCCTTACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.4

0.39

1.2

56.6

47.9

Major BPS

55.7

0.14

1.3

66.8

39.4

Major PPT

85.6

0.8

0.7

77.5

31.2

Minor 5ss

40.8

-1

2.9

49.6

46.4

Minor BPS

62.3

0.38

1.7

69.6

42.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018532

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037786

3493054 - 3494935

1882