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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3527594_3532069_F

Intron Information:

Intron Rank:
140362
Intron Class:
major
Intron Phase:
Intron Coordinates:
3527594 - 3532069
Intron Length:
4476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
GTTCAATTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AGTTTTATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78.2
0.63
0.9
73.9
40.3
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
59.7
0.38
1.5
75.48
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025506
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035004
3527439 - 3532075
4637