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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3527594_3532691_F

Intron Information:

Intron Rank:
140359
Intron Class:
major
Intron Phase:
Intron Coordinates:
3527594 - 3532691
Intron Length:
5098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTGACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTCTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.3
0.82
0.9
84
31
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
85.2
1.1
0.9
90.04
24.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025506
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027265
3510780 - 3533549
22770
ENSAPLT00000024965
3504808 - 3533549
28742
ENSAPLT00000042480
3527439 - 3532714
5276