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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3706151_3755585_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3706151 - 3755585
Intron Length:
49435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCATATCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTCCATATCA
Flanking Amino Acid:
KPTMDPAVPTDFQSLIYICI
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
60.4
0.23
1
54.9
38.9
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
68.2
0.57
1.9
84.62
35.1

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000002824
3702064 - 4028695
326632