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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3755841_3758907_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3755841 - 3758907
Intron Length:
3067

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGCATT
5'SS Class:
major
3'SS Sequence:
CATCTTTTGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTGCTCTACCC
Flanking Amino Acid:
DEVRVLAHPCRKAPHFLRLQ
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1
71.9
39.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
72.4
0.5
1
73.1
36.9
Minor 5ss
42.1
-0.9
3.1
63.3
42
Minor BPS
47.3
-0.2
2
62.23
43.8

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000018022
3751134 - 3812746
61613
ENSAPLT00000002824
3702064 - 4028695
326632