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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3759024_3761410_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3759024 - 3761410
Intron Length:
2387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTGCCTTCACA
Flanking Amino Acid:
WSQHDKLWLQQWNGRDTALM
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
78
0.63
0.8
71.8
32.8
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
64.7
0.46
1.9
74.7
43.3

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000018022
3751134 - 3812746
61613
ENSAPLT00000002824
3702064 - 4028695
326632
ENSAPLT00000042124
3702064 - 4028695
326632