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Intron Name: Anas_platyrhynchos_platyrhynchos_21_3812700_3880605_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3812700 - 3880605

Intron Length:

67906

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTCCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAT

U12 Branch Point Sequence:

TTTTTGTTATTC

Flanking Amino Acid:

PPLTTRTKCADPVHGPQNVE

Intron Amino Acid Position:

343

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

81.6

33.2

Major BPS

88.7

0.96

0.8

36.5

Major PPT

84.9

0.79

0.7

80.1

25.5

Minor 5ss

42.5

-0.8

3.4

64.3

47.2

Minor BPS

53.4

0.09

2.2

73.26

38.6

Associated Gene:

Gene:

PTPRT

Ensembl Gene ID:

ENSAPLG00000002683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002824

3702064 - 4028695

326632

ENSAPLT00000042124

3702064 - 4028695

326632

ENSAPLT00000041927

3702064 - 4028695

326632