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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3915319_3918654_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3915319 - 3918654
Intron Length:
3336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGCTT
5'SS Class:
major
3'SS Sequence:
TGTTCTGCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TGGCGTATAACT
Flanking Amino Acid:
ITTRIATKISAPSMPEYDTD
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.1
66.4
44.6
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
74.9
0.56
0.9
69.4
36.8
Minor 5ss
35.7
-1.6
3.7
56.5
47.7
Minor BPS
47.4
-0.1
2
67.02
43.5

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000002824
3702064 - 4028695
326632