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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3918758_3936872_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3918758 - 3936872
Intron Length:
18115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGCTCTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
CTAATCTCACCT
Flanking Amino Acid:
KPAQSRGAPVSVYQLVVKEE
Intron Amino Acid Position:
580

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
85.2
32.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
71.4
0.48
0.8
69
31.5
Minor 5ss
37.2
-1.4
3.6
57.3
47.4
Minor BPS
47.7
-0
1.9
65.3
45

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002824
3702064 - 4028695
326632
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632