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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3961087_3967627_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3961087 - 3967627
Intron Length:
6541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CGTCAATATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTGTTCATCT
Flanking Amino Acid:
LLGAMLTIKRRRNAYSYSYY
Intron Amino Acid Position:
746

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
63
0.29
1
59.3
40.8
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
51
0.11
2.2
79.81
42.6

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041927
3702064 - 4028695
326632