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Intron Name: Anas_platyrhynchos_platyrhynchos_21_3961087_3977413_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3961087 - 3977413

Intron Length:

16327

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

AAACACCCTAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCTTCAA

U12 Branch Point Sequence:

CTGACCTTGATT

Flanking Amino Acid:

LLGAMLTIKRRKLAKKQKET

Intron Amino Acid Position:

729

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.4

1.02

0.7

87.4

21.4

Major BPS

78.2

0.7

79.9

32.6

Major PPT

49.9

-0

1.1

46.1

35.5

Minor 5ss

39.3

-1.2

2.9

45.2

Minor BPS

66.8

0.61

1.3

75.42

41.9

Associated Gene:

Gene:

PTPRT

Ensembl Gene ID:

ENSAPLG00000002683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002824

3702064 - 4028695

326632

ENSAPLT00000042124

3702064 - 4028695

326632