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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3967658_3977413_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3967658 - 3977413
Intron Length:
9756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
AAACACCCTAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
CTGACCTTGATT
Flanking Amino Acid:
RRNAYSYSYYLKLAKKQKET
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
49.9
-0
1.1
46.1
35.5
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
66.8
0.61
1.3
75.42
41.9

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041927
3702064 - 4028695
326632