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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_398653_402822_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
398653 - 402822
Intron Length:
4170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACCAGA
5'SS Class:
major
3'SS Sequence:
TTCTTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGGAAAT
U12 Branch Point Sequence:
TTTTTCTTCCTT
Flanking Amino Acid:
SHDKELRNYSVNTYLFMMQA
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.3
59.8
46.7
Major BPS
45.9
-0.2
1.3
48.4
42.4
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
43.8
-0.7
2.7
49.1
46.7
Minor BPS
45.9
-0.2
3.6
82.74
39.5

Associated Gene:

Gene:
B4GALT5
Ensembl Gene ID:
ENSAPLG00000015618
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016285
398367 - 411629
13263