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Intron Name: Anas_platyrhynchos_platyrhynchos_21_3993456_3999489_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3993456 - 3999489

Intron Length:

6034

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAGGA

5'SS Class:

strong_major

3'SS Sequence:

GTTTATTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATAAACA

Flanking Amino Acid:

QGYGFKEEYEALPEGQTASW

Intron Amino Acid Position:

842

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.8

71.2

34.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

86.4

0.82

0.8

80.8

36.4

Minor 5ss

24.3

-3

3.1

29.7

43.1

Minor BPS

0.4

1.9

80.01

35.9

Associated Gene:

Gene:

PTPRT

Ensembl Gene ID:

ENSAPLG00000002683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002824

3702064 - 4028695

326632

ENSAPLT00000042124

3702064 - 4028695

326632

ENSAPLT00000041927

3702064 - 4028695

326632