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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_3999578_4007197_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3999578 - 4007197
Intron Length:
7620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTATTGTTACT
Flanking Amino Acid:
NKNRYGNIISYDHSRVRLQL
Intron Amino Acid Position:
871

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
69.5
41.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
89.7
0.89
0.6
88.2
21.7
Minor 5ss
40.1
-1.1
3.7
67
44.2
Minor BPS
47.9
-0
2.3
75.78
41.1

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000002824
3702064 - 4028695
326632