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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4011551_4012821_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4011551 - 4012821
Intron Length:
1271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTGATGGAAGA
Flanking Amino Acid:
YVIRTFTVQKKGYHEIREIR
Intron Amino Acid Position:
995

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
76.7
0.6
0.9
73.7
36.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
36.9
-0.9
2.3
48.11
42.7

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000002824
3702064 - 4028695
326632