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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4012913_4012955_F

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4012913 - 4012955
Intron Length:
43

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCTTTGTTC
5'SS Class:
weak_major
3'SS Sequence:
CCCCCAGAAGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AGTTTCTCAACC
Flanking Amino Acid:
GVPCYATGLLGPIVVHCSAG
Intron Amino Acid Position:
1025

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.4
56.4
45.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
52.9
0.07
1
47.1
33.2
Minor 5ss
33.5
-1.9
4.1
50.5
46.1
Minor BPS
67.2
0.52
1.5
73.84
36.4

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000002824
3702064 - 4028695
326632