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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4025734_4027141_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4025734 - 4027141
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GCATCTTGAAAA
Flanking Amino Acid:
RIFRICNMARPQDGYRIVQH
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.4
35.1
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
85.3
0.79
0.8
83.6
31.4
Minor 5ss
37.8
-1.4
3
40.6
45.1
Minor BPS
52.9
0.09
1.5
59.32
40

Associated Gene:

Gene:
PTPRT
Ensembl Gene ID:
ENSAPLG00000002683
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042124
3702064 - 4028695
326632
ENSAPLT00000041927
3702064 - 4028695
326632
ENSAPLT00000002824
3702064 - 4028695
326632