Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4027306_4027807_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4027306 - 4027807

Intron Length:

502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCT|GTAAGTAGG

5'SS Class:

major

3'SS Sequence:

CTTCTGCACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTCAT

U12 Branch Point Sequence:

TTCTTCTGCACC

Flanking Amino Acid:

GRDGRTVVHCLNGGGRSGTF

Intron Amino Acid Position:

1326

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

45.2

Major BPS

69.6

0.49

1.3

73.6

41.8

Major PPT

70.2

0.46

0.9

61.9

Minor 5ss

-1.3

2.8

52.4

44.2

Minor BPS

55.1

0.14

1.9

70.43

41.2

Associated Gene:

Gene:

PTPRT

Ensembl Gene ID:

ENSAPLG00000002683

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041927

3702064 - 4028695

326632

ENSAPLT00000002824

3702064 - 4028695

326632

ENSAPLT00000042124

3702064 - 4028695

326632