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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_21_4068389_4079667_F

Intron Information:

Intron Rank:
133546
Intron Class:
major
Intron Phase:
Intron Coordinates:
4068389 - 4079667
Intron Length:
11279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAG
U12 Branch Point Sequence:
TGGTCCCTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
63.7
0.34
1.6
75
39.9
Major PPT
79.6
0.67
0.9
72.9
37.4
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
58.3
0.34
2
77.54
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021835
Chromosome:
21

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039063
4068231 - 4132172
63942
ENSAPLT00000017653
4068231 - 4113603
45373